NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209482_1000314

Scaffold Ga0209482_1000314


Overview

Basic Information
Taxon OID3300027668 Open in IMG/M
Scaffold IDGa0209482_1000314 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43383
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (95.52%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020385Metagenome / Metatranscriptome224Y
F030154Metagenome186Y
F046471Metagenome / Metatranscriptome151N
F070310Metagenome / Metatranscriptome123N
F071405Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209482_10003141F046471GGAGGMQECDECCGEGVFEYERWEKYGDTYEPYAEYKACENCNGTGQTESEE
Ga0209482_10003143F070310GGAGMTEELERELRQMGVLDHKTPAVEIDVYPIWIRDDVVFDEDGQPNF
Ga0209482_100031452F071405AGGAMHPSYLGWQIDWPVFVKRPFTSDGKQWETQEHYNWLNRGIGSDAVASLYVQGFIHHNRELEKQAKVGDRLSELAGPQLDKLIGLLNAEVKANTNSNTEYTEKKVKQSKIDAKQRALLRSYLRNNRWIEDKFFEIRDGILEG
Ga0209482_100031465F020385AGGTGGMTIKPSFKEVLAERQEYLDTLKKNGDLYTRVFLEHSFLYHMGDSGLEPLTTAQHSTLAKWKESTQ
Ga0209482_100031467F030154AGGAGMTYTIATRPIGSKFSFVPVVGFILMPLKQAQELAKEYRASGQDAVAFNTSAGV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.