NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209482_1000092

Scaffold Ga0209482_1000092


Overview

Basic Information
Taxon OID3300027668 Open in IMG/M
Scaffold IDGa0209482_1000092 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73218
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (16.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001802Metagenome / Metatranscriptome632Y
F007611Metagenome / Metatranscriptome348Y
F042015Metagenome / Metatranscriptome159Y
F061291Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0209482_100009210F061291N/AMKTKEELEQAIVMHEEALESSRHSVIVDTQDLEQAKKELKQLNKPVLTGLQLDDINEAIESAVGNFDFDDAENYHTEFELDYDAKVTISSFEFQSAQDLVEAVVEKVHALFIEKSEDNA
Ga0209482_10000924F007611N/AMKKKWITVLDYETSRVYQYQVSINKHAEEFITFKGHRLKDVEWMEHSDSRLITN
Ga0209482_10000925F001802GGAMNTIKHLKNNYLQLGNLIYRPYTVCELPANFGCINFNEKEGISEWFNYKGFTYLFDKMAK
Ga0209482_100009288F042015N/AMKIDKVRAHREELKRLLFNVPNSTVVTKTITVTMIKGIDGKPNQWWDGYGNVSIDSDGPNGFTHFGTSQEYPMKYALNCKEYLSGEYQLIVK
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