NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208565_1015434

Scaffold Ga0208565_1015434


Overview

Basic Information
Taxon OID3300027662 Open in IMG/M
Scaffold IDGa0208565_1015434 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2888
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051365Metagenome / Metatranscriptome144Y
F054237Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0208565_10154341F051365N/AGVELMLLALNSGGFVRHENFDLINMLTYDFAIFVWLGYSFSRKAGREASVNRLQTQRWEQGLADLQPAVPSDSLIPMFEGMVERAFSRSSNLEQTADHLEQAADHLPRNRPGKPLRANSAAAGSSKRQ
Ga0208565_10154344F054237N/ALSHSEVLWWGDRFLIQAEVAYTVATAGKDLESLLREMKPSHSGKTAKAAAAGAANNSGPMRG

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