| Basic Information | |
|---|---|
| Taxon OID | 3300027660 Open in IMG/M |
| Scaffold ID | Ga0209736_1005336 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4231 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Thunder Bay, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F049989 | Metagenome / Metatranscriptome | 146 | Y |
| F056251 | Metagenome | 137 | N |
| F104297 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209736_10053362 | F104297 | GGGGG | MEDSELITPAFDRFLDEPPTRREMQKAFNKMGNNDSELMLMVDNLNLVANLLCEKAGVTKGEIEVYVAKKAAEMKAFIEDQAKIKESEAANVKLD |
| Ga0209736_10053363 | F049989 | GAGG | MSSLTDSYEQYRVPEWFQDELTRIGGVNRYDKPNFIVCWGQGGDDECFYRAGAHWDVPGQPSFHGYRNLLVGGGTPSWCLLKWDDAFVYGTPESWYVANYDMDSDLQTLGEYGYEGRYSLLYNMCWRDMKDGKLNIETMPLNSFILNLLVPIILQSKDISLEKYKAAMKEMKEKEDAEELTRIEDSMRDASLAFKGPSSYARQGCRTWHIDKKMEEMSRNWNRMVNNARSLGRGLSVHSENPTY |
| Ga0209736_10053365 | F056251 | AGGAG | MSSPTINSPQAFGSTSLETIMNLVRSLVNDTQAGLTGTPGEGQILTDNPLVSPFTQPFLNSSIRELYRELRNVGDPQLIFDNVIIEGLPILNSPLNGPGGCDPTVQTILSTVGYFDGVRQWPNFLLPANMLYPTHLWERATGTNDNFESMHQVQDGLPGQQQNQVLGKWEWRNNNINFMGATTQRDIRMRYYGALPTFFSSTLDFSSTYVPIFDCTDALAYMTAVKYARMLGSPGLADLLAEYKNQMFQLKNATTRRAQSTNYHRKPFGNSSGDINSEFWYGSW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |