| Basic Information | |
|---|---|
| Taxon OID | 3300027660 Open in IMG/M |
| Scaffold ID | Ga0209736_1000009 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 83442 |
| Total Scaffold Genes | 78 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 60 (76.92%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Thunder Bay, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000512 | Metagenome / Metatranscriptome | 1064 | Y |
| F000624 | Metagenome / Metatranscriptome | 977 | Y |
| F000696 | Metagenome / Metatranscriptome | 931 | Y |
| F000703 | Metagenome / Metatranscriptome | 928 | Y |
| F000739 | Metagenome / Metatranscriptome | 913 | Y |
| F000781 | Metagenome / Metatranscriptome | 895 | Y |
| F000885 | Metagenome / Metatranscriptome | 849 | Y |
| F001959 | Metagenome / Metatranscriptome | 611 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209736_100000937 | F001959 | GGAGG | MKNLDSIFAAYLIAWGVFFVYFVTVARRTAALREEIERLKNLVNRGK |
| Ga0209736_100000949 | F000624 | AGG | MSVHWFAVLAAIVPVGVQFALFLRWLHRRMRDSEIAATFVTDIATNHLPHIYLALRQIAEKQGIALHEPPPVRFVNLHTEKCEHE |
| Ga0209736_100000953 | F000703 | N/A | MRIREYQRSDLDALRAIHAAQGFDYPLPDLNNPLFVSKIVLENEAANKIAAVALLRLTAEAYLLLDPKQGTPRDRWQALLALHHATRRDAWQRGLEDVHAWLPPPIAGKFGKRLTRLGWLRDDTWTPYCHKLTAHQKT |
| Ga0209736_100000954 | F000781 | N/A | MLTVSQLAPLKDRDPYLYETLVKIVSAVNATSQRSGVDPSTPSPAPSSIASLAVQASNGWFDISVTDPSDSRPGLFYFTESDTTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYIGSLPSAPVTFGAPPTPVAGGGAAGPAPLPSTGSGAFPNGVPRGGNGFGLHPGSRIARLTIS |
| Ga0209736_100000963 | F000696 | AGGA | MPVVGSSAYNTAGQITALARSLLNDAQGNLFTDAVLLPYANSAYRKVQRAIGNAGGGGFIQDDALLVLTAVTAVDTSLQVSLTDATAPPNQLPTDLLVPLKMWERPNGSSQDFLEMVDLSQHGGLPSRAQDTTLSVWEWRADGLYFLGATQDTQIRLRYLKAYPDLTDATSPVLVRNAQEALAYATAALAAWSRGSPLAEKWDEAASDAIEDLVSAAVRREQQSQRRRRPFSSRSGYTPF |
| Ga0209736_100000964 | F000739 | N/A | MNITRIEIWLRGILAAAISGAAGGVLTGFAAVGIDPQHFNLQSGMGATFRIGAAASLINAVIGVAAYLQKSPLPEG |
| Ga0209736_100000965 | F000512 | N/A | MIQVLRETHETPEAVAWRLELAGGRNRYGEPNYRAVWGWNRLAWIGGKFEDRDEHGRLLREVVELRQEPKYPALNRWHIERWVPPETYGSPRNWYAQTIERENAISIPALGPYPSRGEYEHCFTLETPVGGFLQLSPTVAEHVARAIEWSRKSPRATTKKQLYERETRQERHYDDWAYDVLDDATPAFHQQPFVSVL |
| Ga0209736_100000975 | F000885 | AGGAGG | MTTISSGHLEFVGLMVEISGVAAVVAGVVLSLHHWPTAAALVGGAVAYLIGKKLRAM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |