NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1036135

Scaffold Ga0208975_1036135


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1036135 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1560
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011152Metagenome294Y
F016529Metagenome246Y
F028163Metagenome192N

Sequences

Protein IDFamilyRBSSequence
Ga0208975_10361353F016529AGGAGMPLLRFDCSICKKLYGDGRKEHLITKGAELTMHEWFAQCSGCGTFSVKLVDDSLVAGLD
Ga0208975_10361354F011152N/AMTVSPADEWAIHKRASDVVFAQEAILGVIQYYNKLNNHERVVEYAESLAAELCVARYFGLDYDINDNKGKSRSDVGKGIEVKWTSYQGGNLIISPNDRESDVAVLVVGKSPVYYIVGWLPVAFAKRKRFKNPRQDSWWVDQGNLNPIENLARSEYAAIAI
Ga0208975_10361355F028163N/ATEMIDVDTMIGRTLIDGKIVAEFKCEKCDHCERIEILDRAGYLRAVGGEPVLWFCSKCRK
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