NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1021817

Scaffold Ga0208975_1021817


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1021817 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2094
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y

Sequences

Protein IDFamilyRBSSequence
Ga0208975_10218173F003863GGAGGMESKQVSGRQVVHYRNYRRARDRALVRLAHLYPNLYQQLLEEQRSFDEQEGKSWSINPDSRLTVGIHTRANNTPPFGDPADAGEDEGYYGGEA
Ga0208975_10218174F001477GGAMAMTAQDMETTMSNIYTIHPKKSPLILLYEVVDEEGRAEWGGNNAEHCMQWLSLAPTGSRVLVSGWESDEEDAHLVGQSLDITDIVRAASL
Ga0208975_10218175F000821AGGGGGMNEEYLAAKANLCLKQAEKDLKQEEIVRAIKNIERANTALARIFNMEEGEVDE
Ga0208975_10218176F003212GGAMKDKWLVTLEIDTYDGNPGDWDWEKLSTGLDAVKIISSEFKGVVRPLELEGEN
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