Scaffold Ga0208975_1002086

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208975_1002086

Scaffold Ga0208975_1002086

Overview

Basic Information
Taxon OID	3300027659 Open in IMG/M
Scaffold ID	Ga0208975_1002086 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8071
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Terrimicrobiia → Terrimicrobiales → Terrimicrobiaceae → Terrimicrobium → Terrimicrobium sacchariphilum	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F032701	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_10020861	F032701	N/A	GATNKFLRKKITGGEMWMSEIKGVVDSYVDYRADSNPCWSELKVPTTFGCDPCSPKVTECVPQKNGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVHLTGAATVDRVRLMANIKNNDDSPVGDCPEENEECEPFLCCQEKYWGYNIVN
Ga0208975_10020863	F014513	GGA	MADTLEEMVELVKGFVGDSGTCSYERGVKAVNQARRLLWNKRAWTTQEEYVQICCVNGCFTLPARYEQIKLAWVGNEAASLADEWFNQTNALALRPDQSCHRGITEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEAQDQYDTYHKVKVTTANPPTLAKSDLLVKGIRAVTKPVTKGRIRVYAYDTALEAKTLIAIYQPNDAHPTFRRFTAPNTCECITLYASKKYFDLTDPKELVEFIPDAMIYAVLALNSRENRKAQEFLINIDLAVKEQEKEMENVEIPTCGTLRISNFSRAENLIGSDLLSPSPNDYFLYR

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