NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209799_1022447

Scaffold Ga0209799_1022447


Overview

Basic Information
Taxon OID3300027654 Open in IMG/M
Scaffold IDGa0209799_1022447 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1386
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000257Metagenome / Metatranscriptome1447Y
F000535Metagenome / Metatranscriptome1044Y
F001152Metagenome / Metatranscriptome764Y

Sequences

Protein IDFamilyRBSSequence
Ga0209799_10224471F000535GAGGMSTLRTHFTFRVDTWTPDGESIVEHVAGVEDCQVALAAFRAACERWPGTSITLRQGARGIEDSRRLRMAWSDKGRAGGR
Ga0209799_10224472F000257AGGAGGMTRRKREIAGLANEQDFPHLVELTFPPGGFRSVLLEIDAFHRERRIPVRRGRSRHEVKQVYIRFCFPDAATAEAFRNRFGGECLTHAPTVQREEKQEWGKRGRR
Ga0209799_10224473F001152GGAGGMRGEMINEYQKLNSEDQKTFRRWLWANTVVGAILLSGLIVLASKSPGDKSEATAQNATMHTQAKLP
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