NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209007_1000052

Scaffold Ga0209007_1000052


Overview

Basic Information
Taxon OID3300027652 Open in IMG/M
Scaffold IDGa0209007_1000052 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74708
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (63.51%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000949Metagenome / Metatranscriptome823Y
F003215Metagenome / Metatranscriptome500Y
F005153Metagenome / Metatranscriptome410Y

Sequences

Protein IDFamilyRBSSequence
Ga0209007_100005235F005153GAGGMQVFHIRYRNAQGALMRILNAVSRRGLDLPSVHAEAAGQEHAVTMLLEVTHKQIGQLSREWYGIVDVIDVRSSVAVQEHAEAAWAPLPPASASIAEQSARAALA
Ga0209007_100005245F003215N/AMDAMRGTVRTLRAVQWTMLGSILLYAVIGEVLGRGARAIDPSLSYVFTTAGVAIVGMIFVVRRTLVLRSAENLAAHPDDSLTLRHWKSGYITTYALCEALGLFGLILRFMGCSVQQSLPFYIGGFVLLFFFGPQEPASA
Ga0209007_100005249F000949GAGMTSKPESPRVRSDAPFYLLAALAGIGTGLADVVIDDLLFTALLVLASCMLLGLLRPRWPWRWVIVVAAFIPLSELAAYLIMSVRPTRGQAYGSFLTALPGMAGAYGGSVMRAVIDNLRSG
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