NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208960_1104891

Scaffold Ga0208960_1104891


Overview

Basic Information
Taxon OID3300027649 Open in IMG/M
Scaffold IDGa0208960_1104891 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)759
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015867Metagenome / Metatranscriptome251N
F018713Metagenome233N
F024743Metagenome / Metatranscriptome204N

Sequences

Protein IDFamilyRBSSequence
Ga0208960_11048911F024743N/ALYNLYSQDSSAYNEGKKAQDLIIIMNVLHLRLEHNMPLHKIAKRCGIKVNKVKLILFNYDSRY
Ga0208960_11048912F018713N/AMTPDTNLWAEIPQEVKDAAILLGNYFKKQGIDSWTLYDVSSRQNFNGAYNQGLDTAISLVSEGSDMETIICGLENSKKQFSNECGDGIDYTKSF
Ga0208960_11048913F015867GAGMKYKVTYYDYDSDSYLTKELYWMASYRGSFDFVPVDDGPKENWKGFSISGSGVNLFYNDKGLNITVDGFQEMKSGGYGKTTTLIQSVN
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