NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208960_1001104

Scaffold Ga0208960_1001104


Overview

Basic Information
Taxon OID3300027649 Open in IMG/M
Scaffold IDGa0208960_1001104 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14592
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013630Metagenome / Metatranscriptome269N
F028167Metagenome / Metatranscriptome192N
F058191Metagenome / Metatranscriptome135N
F091588Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208960_100110413F013630N/AMSTTIKIGGAEHPLLFNMNSLRNVMQLAGMETFADLNLQKDLAKSMDFALSCAFYGILEGYEALDKPTPYPTVQKLGAAIKKFQEISPALEGFTQAITEFFAPADEEAGE
Ga0208960_100110418F028167N/AMAEASIDIVSGYDGFKYHSASTVTSVSYDALSVQSDTVFSSFTVQGDNAASGTNVLSTRGMSGITFQMGAYLPAGKGFKITGFVIDSGAVIAY
Ga0208960_10011042F091588N/AMKKKIETTEPVEVTAGVTFRLEVSGLYFIICRAQGGAFKPCGKDGLWSSTPHLYRNQYLAQLALDFFFANS
Ga0208960_10011048F058191N/AMLVKFLINPTGHFNLSYNLGEVVDIETKQAELLLEAGAVEVVAAPKVSKKKPTNPETELDAE
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