NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209420_1000219

Scaffold Ga0209420_1000219


Overview

Basic Information
Taxon OID3300027648 Open in IMG/M
Scaffold IDGa0209420_1000219 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35184
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (84.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001247Metagenome / Metatranscriptome737Y
F004959Metagenome / Metatranscriptome417Y
F020432Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0209420_100021919F004959N/AMPKRAKKRTVTETEPQPLTGWSQIAAFLGEPPSVVQRWASEGMPVRRQGRHVEATPDELNAWLGKESGKPVHVATEDTDLTAELKRGLSFVRHEKSSKRKAKS
Ga0209420_100021936F020432GAGGMMAPEPGPNRMNMKFTNGGRTVVIHLVRGLPPKLSRDKKTITITFAERGAIRGKLRKA
Ga0209420_10002196F001247GAGGMKTKTWKVVTNTGRQADLQSGLERKAVQKPPHISARDFVHWLAPESHVDDDSLRSLFKL
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