NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209625_1002460

Scaffold Ga0209625_1002460


Overview

Basic Information
Taxon OID3300027635 Open in IMG/M
Scaffold IDGa0209625_1002460 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4118
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001632Metagenome / Metatranscriptome660Y
F002410Metagenome / Metatranscriptome562Y
F055024Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209625_10024601F002410N/ATDLELDNQRISSRVIDIDGYGVDVDGSGSVSISGSDELNYRGLAEITTKESFFTNTVARLSGATLKDGKLQFPFRIGGTINNPVFSKGKGDKDVDAAQKPH
Ga0209625_10024603F001632GAGGMIRNPWKTVLAAGLLCAVPAIASGQQDQQAYCKYEMEQAQAQRDLLRTPAATAGFTQPETGLPMQLVGGATLGLSDVRKAELTMDVARKNCELYKATAGAQQEIQYALSGLEKEALLNRLTLIEQATKSLDTLIAQTAKMLEAQNATQLMLFTLQTTKIKLEADRADTRLKFSAIYLPPLSDQPLKELVAQKQSSEEGAQRVLAKLSRQNNWDVALTVGVHQQVNPIAQGAQPYGQVSINYNLASHAINKHLDRAVEAHDEWKKVQENDVVRQMEVLRQQLVDCVTVQEVKLKSLEEENKQIDKNLQLVAAPDTSGAFDFHNQLAATQLLLQIETADASFRIGHLREYLAKNY
Ga0209625_10024604F055024N/ATAVHPIFKTNIRGFLMQMNLDHPESAKSKTVFLGRKPLLF
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