NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208044_1002064

Scaffold Ga0208044_1002064


Overview

Basic Information
Taxon OID3300027625 Open in IMG/M
Scaffold IDGa0208044_1002064 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10211
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000269Metagenome / Metatranscriptome1410Y
F000323Metagenome / Metatranscriptome1300Y
F045883Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0208044_10020644F000269AGGTGGMGTFRRAVLQSCVLVCSILIAMASAGEQPTPKPTDVPATVIAHLPLPQATGSQMLLQKENGKHYLYVQQAGKQGFMIVDVTKPEKPSLLKRTAESNQSTTGNLQIVSPDVAIAEAPEKTPTTLTSSNRPTETVRVLDLSDPRNPKTLETFNKVTSLLPDGGHGLIYLTNNEGLWILRYDRPSPLEPAKKKKPCDSETAIMAMPPDCD
Ga0208044_10020645F000323AGGAGMKKMWLALLLSGSLLLAQNNPSNTSQQNSKDSKGQVTVQGCVSRASGDYILMKQDPGMTYELQATGKIRLRKYLGQRVEVTGKESPSMMTSSDAMTKTGAPSSVTLTITSIKTIEKECSV
Ga0208044_10020647F045883GAGVWRQSQKTDAVGGTTYTRFTWAGKFLKSPQGDVPNRPAFVLDCVSGKGSRRPKGRLMAGNLLVGTTLKIVYIEPEEIHGTSYYPKVSVRYRMDNAKEELEQWSAGTEKTSASIPAGSLKKMLRGHTVEITADDDRGLPVVMQFDMPDPTPVEAGCAVDDHKR
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