NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209037_1036624

Scaffold Ga0209037_1036624


Overview

Basic Information
Taxon OID3300027612 Open in IMG/M
Scaffold IDGa0209037_1036624 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1221
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034398Metagenome / Metatranscriptome175N
F061813Metagenome131N
F073281Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209037_10366242F073281GAGGMRPRTICHPEALADWRANDEDTHSYLATVQEQINIGRTQDASTRKHSTYDNKVQKEQEKFEGLLARRLKDAIEQETRKRGTICKEGEA
Ga0209037_10366243F061813GGAGGMAITTVSNENKTRVDYLVYKQVTEVLALVKQANETLNDTGDIDSDSLDNASSHLKCAIDMLDHYLRAHA
Ga0209037_10366244F034398GAGGMIAEQYRNIKPHFVHADHMPMVCRWSCILLDQDTENPPFEPARYFVANVFAETKEQVLDCLGEEYPWCDIMYVDKALGGHTDDDFLEAWLHYFDANNAQPLREAPHGNNYSK
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