Scaffold Ga0208974_1119692

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208974_1119692

Scaffold Ga0208974_1119692

Overview

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1119692 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	689
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034908	Metagenome	173	Y
F049426	Metagenome	146	Y
F080877	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_11196921	F080877	N/A	ERDIDPPEPQEPIRIKSWWIGYRWEDGTEDTLNLDDNFRQARSDIEGVLDEVEYEVNRDILENQAQKWGEPDRDY
Ga0208974_11196922	F049426	AGGA	MKTRPIFKEPKIKMQNPYNYEREVYMSEYVTIPKARLRRLIITEVIAWGISAFILLVTLI
Ga0208974_11196923	F034908	GGA	MKKFSVVIEVSMADDYKDMVEKWKVEPSDHVATILTETAREKGLVVKASVLESDHTLHDRLIKYRDHLVQADAYNDLENEII

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