NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1020001

Scaffold Ga0208974_1020001


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1020001 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2088
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006547Metagenome / Metatranscriptome370Y
F006935Metagenome361Y
F022884Metagenome / Metatranscriptome212Y
F040624Metagenome161N
F047676Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10200011F022884N/AMLTINNLDKIVRYPIGYTFRVKSMVCGHTNYHISLIDGKGQYRDLKLNRMKGKRGNYKLSYGNSLTNLPFSDIHNLDLFCAHIKKLVC
Ga0208974_10200013F006547N/AMKGLLILLLPLSISAQTYDTSYQMIYYQKSLIKKGKVELYGYTSYDLWWADESGMGITITIPNKRKKKKHKH
Ga0208974_10200014F047676N/AMELIITLIVLIIVWCIAFMVGNKQGRNQLVNQIKKDGGYYDMEYTSSAYPILDPTSSVNNDTMGTKIEPCIGHELESQKEIEKRDIDFMHKWIREKSGK
Ga0208974_10200015F040624N/AMKSEKIMALYKRKKELQEQIIYWEKFQGVNWLGKWGRSVRLELLKEKFERIEKQISKLKN
Ga0208974_10200017F006935N/AMDKRYAKQIIEWAEEAKEILTVRKEIIMDDDVTDEQLGTIIRMMYRAKVEAQNETITKTKENLEL
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