NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1021164

Scaffold Ga0208966_1021164


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1021164 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1915
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013523Metagenome270Y
F074449Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0208966_10211641F013523N/ARGGLVVQPTDKILLESLGTYHFEDGSRKKLVKYTEQNYAHIDGLGDCIRYGIHHLFPITHDNAGVPDYITSDITVNRMPGSEHMPHSPLYPGGPTWEELINNDLQHGEENHVVW
Ga0208966_10211643F074449AGGAMKNSHFLKRNPIYNATYEQMQGYQQAYLGGMVFKQSVRKKRPSEDSTIHLDLIQNTVAQPVCRYVVDTVNDVLFEPGVKRIIRFATPEGNAINQDNMGWSELFVLDSDLQNRTLTGFMETVGDLTSIFGHCWIAVDMPNENEGNLGRPYVCAISPLDVWDWEFEYYGGRPILNYVKIKESEDESCYTFKCYHLGDATEPSYWECYEVKKANPDSESELIDSGVYPEGMSIPVFIAYGRRDPRLIDIGVSDIDAASEAQREHYKLECEKYQSIQFAKTIIRAEKGIAIPAHAGAIVRAMQGQVETISVDTGDVDKIIQTQRDILEQIEALTGLGGLRTSKNQVQSGISIIEERKT
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