NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1014813

Scaffold Ga0208966_1014813


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1014813 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2311
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F000868Metagenome / Metatranscriptome853Y
F007644Metagenome / Metatranscriptome347Y
F021535Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0208966_10148131F021535N/ARPLGAISKLSAQYPTLLFTLSYEEETGWGGEMEFLRGEVISESEYDNMCRDCDATDQMEYCEEDCGQICGNCNWLGEADLDAVAKCQTHAIYLETKVPEYRKVGTK
Ga0208966_101481310F000852GGAMTTKREYLKAQGITVGVRGRFSGAAKVVLEEALAKGLTFTAEVPVKKAK
Ga0208966_10148132F000868AGGTGGMSFLENENEMVIDMTYSEIGAMLVEDWVNANLDEGQMFADFRFAEMSDSNYLKGRFNLFYDLNPGDQYYLECEEE
Ga0208966_10148136F007644AGAAGGMTKSSVFLQYMKLHLISLEQDLESNPESINVIDIPGQIEATRHLLSVATDIMNSTNERYE
Ga0208966_10148137F000263AGGMNSEDIGLPPHLQRLVNAGVPGLDIMHGELKNLMLIAEQELADAIEREEESEEAMDSMLRTEAEGMLDALVLIYQLTYDLSFAIGARDEV
Ga0208966_10148139F000441N/AMRMSDNYINDQLSTAQKLLWSGSETENIAAHNIISKLIQDRVEQADQN
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Institute for Fundamental Biomedical Research
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