| Basic Information | |
|---|---|
| Taxon OID | 3300027586 Open in IMG/M |
| Scaffold ID | Ga0208966_1001578 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7124 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (58.33%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002398 | Metagenome / Metatranscriptome | 563 | Y |
| F002406 | Metagenome | 562 | Y |
| F009266 | Metagenome / Metatranscriptome | 320 | Y |
| F010618 | Metagenome | 301 | N |
| F060914 | Metagenome | 132 | N |
| F101144 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208966_100157811 | F002406 | GAG | MENIKWIQAMSDRLRDTLSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDAE |
| Ga0208966_100157812 | F010618 | N/A | GVGLKNGKCFSRRVKKLTLKELILKLQELDKKYEQYSKDTEVVLAIHSKNEFNPEVNLDYIDEVLHPALDTFSGYICRIVLCGEFEQED |
| Ga0208966_10015785 | F101144 | N/A | MIVKTFTYYITERHGYVETTRAYLRKLKISKLISPYSKQSRSKVYIEEDGDLKIFVKRHTIAEIAITLKEEEKEQIFFDNMWNFKDDECQDKQFDAFKSEWSLSQKVFFVKPESIKHLRNSTFETKDGKCLKIVPTFFLDGKVLNETQLKKLGIELTNIKTNELDYENEF |
| Ga0208966_10015786 | F009266 | GAG | MTAKEIKILDNEIQYLCEQQDRVKAIREYTNINPKFTFLREAETIESLYKSVLENRKQDKSTYFCCATSGWHVVYLRDKKTYKKGEKFSIKIYHTFVLADNLD |
| Ga0208966_10015787 | F002398 | AGGA | MIPLMLFTLINLNPINNFVSLKTYISENAKIHCQVYWIYEDIPNFPRLNSIEKNKFDFFAYLDTIGIEHTQVGSYYFFRLRSQK |
| Ga0208966_10015788 | F060914 | N/A | VQQRDTQLKRLIKVRSDISASIYPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDINELKVQGIL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |