NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1001109

Scaffold Ga0208966_1001109


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1001109 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8545
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (29.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001338Metagenome / Metatranscriptome719Y
F002413Metagenome / Metatranscriptome561Y
F005588Metagenome / Metatranscriptome395Y
F074555Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0208966_100110915F005588N/AMTTIRPNSKPPFWWLFPWAYARTLHMSANAVKAYADRLDDILDIQRSIIEEQAADIRLLRQRVRDQDDAIIKGTAITPDAYPHE
Ga0208966_10011092F002413N/AMTETPAPMAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAGNHFMDYLGLDGNFMAEDFKLENRDALVAMGMFARRLDKDVFARHFANWCPIMKHHDQVAPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTAGVGPANDEELDSIAEIRASHSFDQEYIFKANARQQIMNEGRLLSRSWKL
Ga0208966_10011093F001338GGAMLKLIKPKIEKIKVWEDGTVSARLFFVDDKGFCLSKNFSSKYGKALAMLVGKFSGKFTEELRLDATPAEYLLYIAPACGQTTIVGVECEANGEYNGKPQYKYKMMYSKGSQKPVINNIDLSDAPPF
Ga0208966_10011098F074555N/AMSDPINPLDPMAFLNNAIANAHAQNELLAANVRIRQLEGRLEAMREAGDAIWYCVRHANRVDPSELQEAVEDWQEARNHA
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