NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208042_1000116

Scaffold Ga0208042_1000116


Overview

Basic Information
Taxon OID3300027568 Open in IMG/M
Scaffold IDGa0208042_1000116 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27884
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (46.15%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000548Metagenome / Metatranscriptome1036Y
F002944Metagenome / Metatranscriptome518Y

Sequences

Protein IDFamilyRBSSequence
Ga0208042_100011616F000548N/AMAQTSSGGLRWIGIPARVFAMTFLFTLLSFAVALLLSIMGTVVYSQVKHVAPNLTFAYRHIAFPCAITAGAIVLVLSLAMEIRNYRQRKTLEGIERVS
Ga0208042_10001168F002944GGAMTKNFLDALVSVLAGNAIYFLLMPHLPRVARHALFKEDWGLLVDFAICTAIFAVVKYARRDK

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