| Basic Information | |
|---|---|
| Taxon OID | 3300027514 Open in IMG/M |
| Scaffold ID | Ga0208338_1000046 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 57608 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Browns Valley, California, USA | |||||||
| Coordinates | Lat. (o) | 39.23550963 | Long. (o) | -121.2836963 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000719 | Metagenome | 923 | Y |
| F004395 | Metagenome | 440 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208338_100004621 | F000719 | GAGG | MKAIATSLLVIATVLTTANAVPAKGDDFNSVVKMIEQFYRVKHVGIPFLAKAGMKVGTTAARIKGGQARRLAEAGSIKLAVFEDQEFNGDFVKFRASLNEAMNATWMPLIQTVSASDEEQVYIFLKDAGDKVNVLVITIEQRDATVVQVTLSPKNLALLLKDPEGTGKSITQEATINDQE |
| Ga0208338_100004622 | F004395 | AGGAG | MYRYRFPLLLLFILASLPIYAQEVEDTIKIKTRVVFLDALVKDKKTNLPISNLTTENFQVLDDGKPRNISYFTREGQARKPLALILILDLREDGAGRFLKRPEILKSMENELAKLPPGDEVAIMAMDMNNENEERLWLTELTNDRAKLAAALARVPAMSVSHEGQASETKSTAAPKTDESAGKPDDVVETETIRGRNGGTVIRETHRDGSVNVKRTNKKGDVTIELGDVYDMAAAVKDATRKAEQTRPNSQLSIVWVSDGIAPIFFEDRDATEQILIRNNAIFNSLTVELRTLFKFLLPVAKPIGGWLGMSLYGSAKYLAGQSGGEAVKVGRPKDYGAGLSRIIGNLTARYSLGFALAENEIDDGRMHSLEVRVKAQDEKGKTRKLQVSSRQGYYMSSTIPKDTAAKAQF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |