NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255182_1004596

Scaffold Ga0255182_1004596


Overview

Basic Information
Taxon OID3300027503 Open in IMG/M
Scaffold IDGa0255182_1004596 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5512
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Rubinisphaera → Rubinisphaera brasiliensis → Rubinisphaera brasiliensis DSM 5305(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088772Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0255182_10045968F088772GAGMSLISFLASAAGGTILGGLTQVLGSAVGELKEWSASKRRIAEIAALKEKQIAIAEVEAFAKAVEGTVGSSYSPPPTSPSWQHGLLAIAAFSTQMVRPLMVAGACLYIWTRPADQLAGLQPEILTVSFACVYFWLGVRHQMTRSK

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