| Basic Information | |
|---|---|
| Taxon OID | 3300027501 Open in IMG/M |
| Scaffold ID | Ga0208948_1017512 Open in IMG/M |
| Source Dataset Name | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1716 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Monterey Bay, California, USA | |||||||
| Coordinates | Lat. (o) | 36.25 | Long. (o) | -122.2099 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005429 | Metagenome / Metatranscriptome | 401 | Y |
| F007317 | Metagenome | 353 | Y |
| F080147 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208948_10175121 | F005429 | N/A | MRTETVDEYLKRGGTVTQIPEVLDTVGSWWGYQERYQAESIKDGTQQVVSWKSVQPDERFDTEDDDRKYWNKLDKRCDKLLKKIKKKK |
| Ga0208948_10175122 | F080147 | N/A | MKEIPMTAKDMMAAYVTAAKKKEVEDYVEEVLEDMSDEDLYCNFRLNGDMFDFRVTDKTDEYEDKYRDEYSIDNQGGLGN |
| Ga0208948_10175123 | F007317 | AGGA | MKQKKIVKEVKENGNGELYIEFSVDELDQFGLKKGDKVEWVETEDGEVWKKVTKNEWCI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |