NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208948_1005350

Scaffold Ga0208948_1005350


Overview

Basic Information
Taxon OID3300027501 Open in IMG/M
Scaffold IDGa0208948_1005350 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3954
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000107Metagenome / Metatranscriptome2222Y
F006126Metagenome / Metatranscriptome381Y
F013137Metagenome / Metatranscriptome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0208948_10053505F000107N/AMAISNVEVVNTASKYIVKSTGIGSETDQELVDAKELTGGTNESKVSLIECYYLIEGTGALTISCSSETDNLILTGKGKYGLRPGQLKFGNDKIFTLTTDSNVTSYLLVTEFRRN
Ga0208948_10053507F006126GAGGMSDLSFKKFTSKLNERRYIGPQGTAEYNKLSPKMRDAINDIYSMINKASDPIVSKIEGIIRAVSRKHGVSTYDIEDYFDNELIK
Ga0208948_10053508F013137AGGAGMSNENVVNMVDSLTGGDNVAAQNAFKSALTDKIGDALDAKRQTVANDWLNAASEAESIQDASGLDSVGAQDDFDAVAAQVDADAAAEPFEIDDDPVEEE
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