NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209332_1041237

Scaffold Ga0209332_1041237


Overview

Basic Information
Taxon OID3300027439 Open in IMG/M
Scaffold IDGa0209332_1041237 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)859
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002101Metagenome / Metatranscriptome593Y
F004095Metagenome / Metatranscriptome453Y

Sequences

Protein IDFamilyRBSSequence
Ga0209332_10412371F002101AGGAGVTTPIITLPLPIPEGVPAKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLVNVAGENDVRDKFCTEIRSASPPQRVAFFVGGPEYLAATPHSDQSPGEAEADSLHKELVAALLANASATATHQRWGILEACKRISSVRSVSEARTRAIREIPRPSRWAEAIEQHSAPEAINIQPL
Ga0209332_10412372F004095AGGAGMSGVNGDKARFNRRRRQKISRRQSTQKMLKALAEKNLVAPALQTNSKERE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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