NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209332_1000028

Scaffold Ga0209332_1000028


Overview

Basic Information
Taxon OID3300027439 Open in IMG/M
Scaffold IDGa0209332_1000028 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36630
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (87.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000269Metagenome / Metatranscriptome1410Y
F000323Metagenome / Metatranscriptome1300Y
F009411Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0209332_100002814F009411GAGGMLNDEPTRQAGIARLISDIRSAKVELLSAQCAADRLRMQYSVEEIVCFGERQALITAMASADAVCRFFASIGAEMKKLERQQ
Ga0209332_100002821F000323AGGAGMKTAWFAIVLLAGSFLLAQESYPANNNRQEVKDSNGQVTVRGCVSRSSGDYTLIKQNPPMTYELQGSHGVKLRNYLGQRVEVTGTESPTMSSSSDAMNKTGSAAPTTITVSSIRTIDKDCPQR
Ga0209332_100002822F000269GAGMKTLGKGAAPITVFALSLFLLPAQLLSASDQPAPKPTDVPATVIAHLPLPQATGNQMLLQKENGKQYLYVQQAGKQGFMVVDVTKPEKPNLLKRTAESNQATSGNLEMVSPDVAIAEAPEKTPTTLTSSSHPTETVRVLDLSDPHNPKTLETFTKVTSLLPDGGHSLLYLTNNDGLWILRYKHPTYLEPAKKKAPCDSNSEIMAMPPDCD
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