NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208965_1002236

Scaffold Ga0208965_1002236


Overview

Basic Information
Taxon OID3300027406 Open in IMG/M
Scaffold IDGa0208965_1002236 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7909
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005132Metagenome / Metatranscriptome411Y
F008384Metagenome334Y
F024348Metagenome / Metatranscriptome206Y
F063073Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0208965_100223614F005132N/AMVDVIFIDDNYLYQNFPLPKRMDRGALLALIQLEQFTSIQDLLGTCLYEDIEAKVLAETLNVSEQGLFKLVKYTLAMYSAKAAISILRTATATTKAEEQKQDQYILDTISTTVDSKLSYINKRITNYILDNEAIKAIATADGCNNDLFDEEDTYQGDVFYPKDGVIYKSCEDGGVSYNP
Ga0208965_10022362F063073N/AMNLTAEEKNNTPIHSLILDRRKAFAELIRAFLRFNVPSAKKVEVMPNGSLSINDTIFKVDIADYTGIEGGFGYIFLNPSSGRLVIEKDNVKKIYKLEVDLLDG
Ga0208965_10022367F024348N/ALTPKRESDYAHPIKMLFEEYYEDLTDTEANLILDIYRVIDVLVYNHEPVTLVRLGFELSINTQELSDYLPIIITILNKVEEQYAEVRQVSD
Ga0208965_10022368F008384AGTAGMPRYDKSLIEREAIISVEQGSLTNELGIFILQRCKEIAASAFVTDGNNELKQALIDAAVMRTCEKFLHYYTEGKSAANLVISIIYSTMTNKIVSLNHSDVYGQNIKGYLTLIEDGESVTKLMRYIKDDYLSEKL
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