Scaffold Ga0209213_1006993

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209213_1006993

Scaffold Ga0209213_1006993

Overview

Basic Information
Taxon OID	3300027383 Open in IMG/M
Scaffold ID	Ga0209213_1006993 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1998
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	El Dorado National Forest, Georgetown, California, USA
Coordinates	Lat. (^o)	38.88	Long. (^o)	-120.64	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003897	Metagenome / Metatranscriptome	463	Y
F095893	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209213_10069932	F003897	AGG	MYNCRECETEINQGTEICPHCGADLTVPIAGADQPAAKPSLQKILLRWGVLLGVLLAAIWSFLWFVVPERQGNPTTQAEARAVESLRQVRSALADYATAQRGAYPREFEALGEPVRTAAQFAQSVNYQIQYTPGPVEADGSIRSYALQARAGNYGFLSFYTDNTGAVHATRENRAATAQDSPY
Ga0209213_10069933	F095893	N/A	DLGFELVGYVNLGSMTTNTGSFMALFSNSRTLEWADVSVVKSATKMAGYIEFITRCSNDAQVDTNTNSIAPVLFPSPSYHVFRFPQVRDAFTLYRAHRMLVQQSTGGSKPELPPRGQELAELKRRLERYGPRQQERGYMYLDGAGEYFRLTWKGAILGAWRSIWPVSLVRRWWMRSRSEDQLRSMGVAQYRPT

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.