NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208432_1044766

Scaffold Ga0208432_1044766


Overview

Basic Information
Taxon OID3300027380 Open in IMG/M
Scaffold IDGa0208432_1044766 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)744
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006697Metagenome / Metatranscriptome366Y
F025017Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0208432_10447661F025017N/AMASNMNISYRQGIRNKGFQVTVPTTGASQTLSLSGLAKAFEGIKFSSTTSAAPATLIDAMQLRV
Ga0208432_10447662F006697N/AANQVSKLAYVDSKLGVSLPGQQTTRVIYDSVNAAAGQQFFQFFTNFAGKNEFQTNLTTNKLDSAESMVIKSIQIVMNSATSNLADHLNLNITVGNQVVLKDFDASFNSNTRGLSFDRLHSGFNDSKNLEVRLLTEIVIPPQVNFKAELQISNALLAADDDVTIILKGYGRIFSAGNSF
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