NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255137_1039018

Scaffold Ga0255137_1039018


Overview

Basic Information
Taxon OID3300027375 Open in IMG/M
Scaffold IDGa0255137_1039018 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepC_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)920
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010317Metagenome / Metatranscriptome305Y
F041755Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0255137_10390181F010317N/AGLPARNMDEHIMGKPNDNYSSIPIEYNLDGVLSYDIEVGKPVVVGRTKRNGVEAYGVFTTSRVTEVGDNYFKTKNSVYSYKFL
Ga0255137_10390183F041755N/AMNITAAKMSGEEILAKYPILNTKWKYSNREYDWNGNDGYYYSNYKDWSTEVVTDPWYRNLINNSNPINTTESESIFFTSVEGNKIILVIYLKTYV

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