NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208972_1089505

Scaffold Ga0208972_1089505


Overview

Basic Information
Taxon OID3300027280 Open in IMG/M
Scaffold IDGa0208972_1089505 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_48_BLW_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)546
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037230Metagenome / Metatranscriptome168Y
F045764Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0208972_10895051F037230N/AMKNLTEEYVNIDWMGICSNFDLEHGDISPEQSFEIDRALGNINEVLHAFIDQNKTKVHIGTATITSTEHNVLMVALDHMYEHLDDLVGDLETFEEENTNLKRIDAVNSLKKLFKK
Ga0208972_10895052F045764N/ATMILDMQLTDEEIKEIADRMDDLMWEGFHDIVDDVYRQREDSSYDYEIWDEDIIKVRNELRKYI

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