NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208555_1010054

Scaffold Ga0208555_1010054


Overview

Basic Information
Taxon OID3300027213 Open in IMG/M
Scaffold IDGa0208555_1010054 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1449A-3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1476
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2327Long. (o)-123.9168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014837Metagenome / Metatranscriptome259Y
F024095Metagenome / Metatranscriptome207Y
F058935Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0208555_10100542F014837GAGGMIQRNINPKPRFVTLTSNPSTGALVGVPLATLFNAAFFRFPQDSIIHYVMVNSTLTCNGALSQAIGSIAYGQGNQTIGEVFGTGLNNFADNVLWRDELLNPAAGVISDSKSNQIVMNEFFVHTDSSIGIYVNGINASVMINATIAFNPIAEWVNFREPTSGARI
Ga0208555_10100543F024095GGCGGMDNTNSLPFVYVVSATLGNAVGATASATLIMQADSRFELMGVMGTGSATETVGGVVFSDVNAQAPSTFTCTIRDQTTGRDLMSAPVPQRVLCGNAFRQFLEKRGIVFEPQSNLLFTFTNTTALANNITLALHGYKMIL
Ga0208555_10100544F058935N/AIARPFIQCPPGFGIDVQSLGSSRTGNAAETQASDTNWLVRPDNRAGSVYNIDPIQIIEPEIQIQAAINFPNGNTPSFSDVTLTTANSATNSTAVELGLIFDGYVIRPSQ
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