| Basic Information | |
|---|---|
| Taxon OID | 3300027205 Open in IMG/M |
| Scaffold ID | Ga0208926_1000110 Open in IMG/M |
| Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15374 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (10.26%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.2327 | Long. (o) | -123.9168 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003691 | Metagenome / Metatranscriptome | 473 | Y |
| F006547 | Metagenome / Metatranscriptome | 370 | Y |
| F008491 | Metagenome / Metatranscriptome | 332 | Y |
| F011762 | Metagenome / Metatranscriptome | 287 | N |
| F017485 | Metagenome | 240 | Y |
| F017826 | Metagenome / Metatranscriptome | 238 | Y |
| F019136 | Metagenome / Metatranscriptome | 231 | Y |
| F074879 | Metagenome | 119 | Y |
| F077291 | Metagenome / Metatranscriptome | 117 | N |
| F103233 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208926_100011012 | F006547 | AGGA | MKWILILLLPFSISAQTYDTTCQMIYYQKSLIKKGKVELYGYTSYDLWWADESGMGITITIPNKRKKKKHKH |
| Ga0208926_100011021 | F019136 | N/A | MSLTITNYKKLESWSHNYKEFMIGEVTENQNEYCFRVGYNGIPYTIKIFRQGTITKEYEVVLRDGADITQYGREWIAGRKLKSLELTALIFEALIVRFKPKAQTQTNNNINYFPS |
| Ga0208926_100011022 | F017826 | N/A | MERLKRIWNVVCVPTAFFLGALNMWIGETAVGCLFILFATNETINNKTI |
| Ga0208926_100011026 | F074879 | N/A | MNVSINDIKEIETQLSITLTDLQRDKILNEYNTIIGDRAESWDELIELLIVKQATIQILKDKNK |
| Ga0208926_100011027 | F017485 | N/A | MNNNELKTKDIVEGITFILMCIAIIGMVCVLYEVNELKGLSKGASNFRSIANQK |
| Ga0208926_100011028 | F003691 | N/A | MNSRMTNEFTETAFNTSRNERPIYRNFAASKMSQSVKPKSMVEFTDFMGRKHIVAVRNNTELKKQMKFFGMLKKEATTIKQIISQYPIKLGKVEKRFIAECKRELKQFGLTKKAIDIVLG |
| Ga0208926_100011030 | F077291 | N/A | MYNENEITLTMTKKQLKSVVSLMGIALETDCKPMNDMSNKKLENLSILYQVLKDMSKQAK |
| Ga0208926_100011034 | F103233 | N/A | MSKGQTDNELYEALIELGYDFGEIDTDDFDEDGFAETAVNLGYRWNETKKEWFNK |
| Ga0208926_100011035 | F011762 | N/A | MSKSKVKEIKLGKRGYKAIVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEESVRKYVGDIEVEMKMDKLENSLIKNVLSKKDKKEVLASKELSDMVPALEVLVDANFRDMNARRPEDTDK |
| Ga0208926_100011037 | F008491 | AGGA | MELEQLIIKGNQKNNMAKKISTKVNYQVTELVNNLNEAATTQSEQKRDFFTTKALYNAKRLSSILSTAKVGAMSLILAVGMVACSAPASTETKTDSTAVVVADTTATQVVDTAAVVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |