| Basic Information | |
|---|---|
| Taxon OID | 3300027174 Open in IMG/M |
| Scaffold ID | Ga0207948_1000740 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3276 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Harvard Forest LTER, Petersham, MA, USA | |||||||
| Coordinates | Lat. (o) | 42.550409 | Long. (o) | -72.180244 | Alt. (m) | Depth (m) | 0 to .1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029230 | Metagenome / Metatranscriptome | 189 | Y |
| F083355 | Metagenome / Metatranscriptome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207948_10007401 | F029230 | GAG | MNTLLKVTLFAFVIGMAILCCSAPWTTTPAGSDAAHNSLGYAAIWSHEFAAVPGARVDLGAFAMLAGVVAFFAIVIGASAYFFRNKRGAER |
| Ga0207948_10007403 | F083355 | GGAGG | MTQPGYSYALNAKLEPLCSRDNQIMRYAASGLPSGTDNRPAYYCGHEGCNVRYDLANGYFTLIGMPEEINPVAEPGVNTLVCERHETWLYRRRDQTKEWGDEWCCGVAGCDFCIVTGTKESWVRTQPRT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |