NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208963_1010523

Scaffold Ga0208963_1010523


Overview

Basic Information
Taxon OID3300027170 Open in IMG/M
Scaffold IDGa0208963_1010523 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1730
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012671Metagenome / Metatranscriptome278N
F014732Metagenome / Metatranscriptome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0208963_10105233F012671N/AMKLIDKLKPEVIEALEEAKIEYSSSHRRIFATLNQISEYRDLTVDQLNLITAYLPQDLQPYSRIGWMYGDNILDKKHRL
Ga0208963_10105234F014732N/AMTKEELEVNLAALKLLEAETGIKHENFKQQVQDTEKKLEDINKPELTPLQFDKIQEAVEEGVGNFSFDDDDNYDKSFAMEYDGKVYLDSIDLTCTHELVEKIVEEVYKLFTEAECPTEEQ

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