NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255198_1087958

Scaffold Ga0255198_1087958


Overview

Basic Information
Taxon OID3300027160 Open in IMG/M
Scaffold IDGa0255198_1087958 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012668Metagenome / Metatranscriptome278Y
F074469Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0255198_10879581F012668N/AMGIVRYENLTVKNVVNSTNSVGEYTTTLTDWFLTRGLVHDVANTLRISERYRAYSDLVNITLNYTPNTKQMVDNQNLYAINWRGFDWRITDVRESNDRMKITFLC
Ga0255198_10879582F074469N/ASISQVIANPLQVLYTVPANFIAQYPVVQQAGLLMLTHLYNNRSNTTETKLNPIPFGVEQLLRPYKSLVM

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