| Basic Information | |
|---|---|
| Taxon OID | 3300027121 Open in IMG/M |
| Scaffold ID | Ga0255074_1000068 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15168 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (75.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oregon | |||||||
| Coordinates | Lat. (o) | 46.1812 | Long. (o) | -123.1834 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000545 | Metagenome / Metatranscriptome | 1038 | Y |
| F000645 | Metagenome / Metatranscriptome | 962 | Y |
| F001322 | Metagenome | 722 | Y |
| F002241 | Metagenome / Metatranscriptome | 579 | Y |
| F009683 | Metagenome / Metatranscriptome | 314 | Y |
| F014613 | Metagenome / Metatranscriptome | 261 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255074_100006815 | F001322 | N/A | MTLWNPVYRVKVDGVTVTGATLSGLTITSGRTDIYQQPIAGYCNLSLIETAEAAVPYEVNDAVTIEVQDSNGDYVNLFGGFITDLGITVQTSGSTATSQQIRIVAVGALARLARAVYTGNFAHQFDGDRIEELLSTVLFDQWNEVPAAEAWNDYDATTQWQDAENSGLGEIDTPGDYELHSETGLNDTVYNLASGYATSGLGYLYEDSQGRIGYADSTHRSQYLSTNGYVDLDGNHAIGPALSIVKRAGDVRNAITVGYGTGSASVTDDDAASISLYGQLATTISTTLRHQADAEAQAAFYLLIRAYPQFALRQITFTTASPEIDDADRDSLLNVFMGMPLNITNLPSNMTDGEFQGFVEGWTWTAGLNRLDLTMNLSPIAFSLQAFRWNSVPAVESWNTINPLLEWYNATIVA |
| Ga0255074_10000683 | F002241 | GGAGG | MAKQENGDKPHSIRYIRQLIEWGFDKEFIAKDCGINVSSLDVRLNRAKKREQDGNQGTEPGTSSGESNS |
| Ga0255074_10000684 | F000545 | N/A | MDENWSRWALGLSEMIKDAHPFPCSNCKLVTPHTEIKRYNTEDVSEAPEEVWLVECQRCFLQRIIYPSDRVASKEDDIVRCEQCGGYKMKAASCKVCRIAAGFERISEKYWTGNATLTKDYDAEI |
| Ga0255074_10000685 | F000645 | GAG | MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVNSCDVYIIKTELYRTEADIHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKINQSPKKAIETTKPALAEFIKKQRPNDPDPIVWDVTAIAEQLGAEVIDEMPLCKCGRGPMILKSGTKEGKEYRGYTCPSRERADQCPARWMKIGADGHWVFQK |
| Ga0255074_10000686 | F009683 | AGG | MKVIREAGQVSDTQKSLNEWLEEAGNTLFDRGIEYGDPRHNLLRIFKISKALGIQLRDPSDLAIIAIATKLSRMVESPEREDSYLDLIGYAAILGRLRFSSPEDWDDIESDSQSQ |
| Ga0255074_10000687 | F014613 | GAG | MFPNLSDTQVFAITIGVPFFGLYLWALWSSAKAKAFNEGYKRGRSSVRYTEVLK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |