NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208009_1002898

Scaffold Ga0208009_1002898


Overview

Basic Information
Taxon OID3300027114 Open in IMG/M
Scaffold IDGa0208009_1002898 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4714
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010917Metagenome297Y
F019996Metagenome / Metatranscriptome226Y
F037125Metagenome168Y
F070036Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0208009_100289812F070036N/ALHLKVRSERDNLYLNDNLANRRLKTLPDIDNLFNPLIVWASDSLICIFGNKRLKTAIDKGYTHIDCLVYRDFDKAVEVGTSIWNTFKQHGLSKVDYLLANDNQGMKNIDRYMVEEKQFIDIYATHQQILIQEALKCNEDIMETGCGYYSTPLLVEIAKCKGIKLIGFVQDINWARRFDYLIGSHYQQIQIDFKQEIPLTQRFGMCFLDHEQFVRDRIKHLNNILEHTDTVVVHDADKVESFALLHKPYTIEMHKHLTPNTAVIRNV
Ga0208009_10028985F010917AGAAGMNLDKITFGSRIINLNLIDKEQASKKKIFGEIDCDTNTLTLDKSLDNIQIANTIIHELCHLIHDEYKLDLPAKAEELVCNSTANGLCHLLYQNQDLLDFLYKSLKR
Ga0208009_10028987F019996N/AMVNKLEQHIKACHKCIVDLLMKKHNLKVKKQAPIKLNLKKYE
Ga0208009_10028989F037125N/AMNQMCGRKKPKMLDKSLRGTNDLEVIIYNLKKEIDRLNEEVQAKDIELKKLQSND
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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