| Basic Information | |
|---|---|
| Taxon OID | 3300026931 Open in IMG/M |
| Scaffold ID | Ga0209850_1000102 Open in IMG/M |
| Source Dataset Name | Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_23-Sept-14 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9231 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (4.76%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River, Washington | |||||||
| Coordinates | Lat. (o) | 46.372 | Long. (o) | -119.272 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021096 | Metagenome / Metatranscriptome | 220 | N |
| F062690 | Metagenome | 130 | N |
| F082169 | Metagenome | 113 | N |
| F100413 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209850_100010218 | F100413 | N/A | MDGLTLKRTPDAIKWIQDSLQTSDIDYVLKHGTYTTQIQHSMGTIKLMLNNFQNRVFCASQMVKKDCKNSENGQEIMKATHYKKNYDANPKIESIKYDTCFNIDLSSAYAYCLFNSGLITKKTFNYLLKLPKMERLTSVGMLATSHVKYFYSGGKCVDFQPYREPTAQIFFYLIDEINYLMQDIKWMLGNDFIFYWVDGVFMKPTTPKSKIEKVENLLISLGYKYKYEKVENFSVNRIQDKVIIDMIKNDESKRYEFSTGASGRELGKHIAKKAMQDLQN |
| Ga0209850_100010219 | F062690 | N/A | MAKRKNNKLKIKLATSGVIYYYLKGRRLKSAEGKAIQAAQFQKRSDAAKKAAANTYKFQGRAIPRIYAVLLQKLFPKKDFMQTMDLSKWTKPDGTPIFKRYSDIQRNIDNASKSDSDIFKLLTEMGYFKDKEGRTALIDICEIIQQKEYDKFKFILIDAEGDEIRGRVAVCTAIRDFEVDVTTDIKNALGMNVVKTYFDYSPNYDFKNKIFKLDLQDQDPNTEIADIIQTQKGELLLPTGKNKFKNVYITYSVS |
| Ga0209850_10001022 | F021096 | GGAGG | VAAVVSPIINYFLTNNLCKDYTAIEGEMSTLVTLSFPNTGDYQRAYYFASNNMLDGQNCTITAIEVVLSTELTRLPSGEFNVDSSILPNGVLYVSNLKRQIIATLPLYGLQRTANNGKATFTYFNDQVWQNCYVEFTSTGFTTPITPLTFRVYYVPKIKN |
| Ga0209850_10001028 | F082169 | N/A | MKFNLKTILAWGGAFVAYRLYKLYELGENVIYKPVGVSFTRGKSINDFVVRVKMELLNPTKTTLQMRGIDGKLKIKDQVIGTFASAPFTIKSGISYFFLDFKVLPDTTGVQIITAIIAKKVPVFIVDMNKRLPYFSINEVFAINPNTIETSKDVMVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |