NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207759_119980

Scaffold Ga0207759_119980


Overview

Basic Information
Taxon OID3300026823 Open in IMG/M
Scaffold IDGa0207759_119980 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 19 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)519
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009421Metagenome / Metatranscriptome318Y
F070581Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0207759_1199801F009421GGAVNKLITTLNLPAPSKSEGARQAQWDETRSVFPIYLALAKHLQFDIPFPQNKRVLPEKADLEFFSQVHTWLDSMDQQVMVHQLRHLLQMTTLIASESGMRALIMRHLRKSVKTNTD
Ga0207759_1199802F070581N/AYAIFLSNLALEFDDRVRLIRKGTGTPAEAAVIALQYHEGSKAVAVRFLEGPCDWMVHP

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