NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255269_1030949

Scaffold Ga0255269_1030949


Overview

Basic Information
Taxon OID3300026573 Open in IMG/M
Scaffold IDGa0255269_1030949 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1485
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001900Metagenome / Metatranscriptome620Y
F056605Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0255269_10309491F056605N/ANGMVPPSIYDIDGVFQTNVPYKVQGKFGWEKVPDEVELAAIELMKDYFAKDTVWRNKYIKNISTFDWDFEYTSEAYAGTGNAYADRLLADYVMVSKVEII
Ga0255269_10309493F001900GGAMLMQASSGLERLMAGNRDGVLKDSTVAQISAYLYYNANVIAKLTKNKQFQSVFSETIFNQIQKDFGEYIDAKARTSPRSLHHVYEWKKVGNKGARLFELSLMSQDGLSFRIGTSFKPSRSLVPLSGGTKRRHVFINKASVMEAGMPLKISPKNATRLVFESDGETVFMPKGASVVVKPPCGPGVKNQYFLAHSRFFTGQLVNQSIKNSGFQRIFNAGMAKALSLPSGIKKVQYKFSPNLVRSQADSALA
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