NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209577_10084104

Scaffold Ga0209577_10084104


Overview

Basic Information
Taxon OID3300026552 Open in IMG/M
Scaffold IDGa0209577_10084104 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2611
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007429Metagenome / Metatranscriptome351Y
F068664Metagenome124Y
F072787Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209577_100841043F007429AGTAGMKKQKPKKSRTAPKPKMQTDRLKGWTKIAQFLGQPIAVAQRWARSGMPMKREGRFITASPEELSRYLGREAGLDVPVHIASEDMDLSADLKRALSYARAGTTGKKRSSR
Ga0209577_100841044F068664AGGCGGVFQIALAAAAVLLIVIGGLLLLRNRPSVQTATVTIDLRERSIARGENPAERNQQPLELSRETKHLVLDLPIGSKEGSYEVALVSGGGEQVRGTTGIAQLENHTAILKADIDLAGVSPGSYFLGVRQPGMEWSRYPIRVK
Ga0209577_100841045F072787N/ANAARRILLNSGHLITTEVEAVQMSSQEVGPEWVLSSFTSPSHGTQDHINELVAVARQLWPRIQAHAVKEQPGQSPDEAIAIACDVWETALRSVGKTIVRSNGRGIQIRDIDAYLFGIFIHRFNRALRKERKRRQMFQYFASTRELELLRQAHDSRAARDIEQSVQAKEAVQNLDEWPRKVWIARKYGYSFPEIASFLGMSEAQVKLRFRYALARLREKLGL
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Institute for Fundamental Biomedical Research
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