NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10169479

Scaffold Ga0209648_10169479


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10169479 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1703
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008511Metagenome / Metatranscriptome332Y
F016091Metagenome / Metatranscriptome250Y
F040251Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_101694791F040251N/ATRSGAIRGMAEMLHPTRKYQSACLQPFRFIALGDDDHRKLRMALDSALDRRFLDPVSEQPRAPLGF
Ga0209648_101694793F008511N/AVSAPAPALAKPQRPKVIVRLADAAVAVATLSLIFGLLLVFFPVAFPRIIVTSWQRGHLAVVLMVLTLVLDAFLYLRASYLRSAKPTVLVAACLGSLPIIVVGGLSFLMESAVAQTISLDLPNLQARINEEVLAHTYLGLVSAVFLPFLVIRLLQQFKATS
Ga0209648_101694794F016091N/ADRGESWMSLKWPLWIGLYVVLGVLVPWATALSWAHQHGSEMRPRVRQLFQRGELGLVGLVVVISVIWNLLQSQFMQQTIALAAVLLAVIGTMAGDVWIESYCRQSTGTAWNSERTWRDSRNLAFLVFTMASVVEILLDRFAKVAAL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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