NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209474_10184786

Scaffold Ga0209474_10184786


Overview

Basic Information
Taxon OID3300026550 Open in IMG/M
Scaffold IDGa0209474_10184786 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1338
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003089Metagenome / Metatranscriptome508Y
F036463Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0209474_101847861F036463AGGAGMINPISSVHPPVVQQGAHAPAEAKPDPHAQTPPVRKSGEVSQDQVTLKSAGQVDHER
Ga0209474_101847862F003089N/ADKGLALAREEFEREWNPDLHIKLERVSSEEARVIVTNLAKTSVLLQLLQLRKLSHAMPFERFRLNDPLVGGMTWSQETGKRILACTGYEFEGPLAASVTFYAAGRMYRTDWFRAQIVVREGRIVSLEPSTMSSRRVRQIERKGPERRREFVQDVAGSGEIGEIEETAENKEEKASAAGA

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