NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256867_10167521

Scaffold Ga0256867_10167521


Overview

Basic Information
Taxon OID3300026535 Open in IMG/M
Scaffold IDGa0256867_10167521 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)816
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025476Metagenome / Metatranscriptome201N
F030180Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0256867_101675211F030180AGGCGGMGEDQYTSHATFEVKRTGGPDWTAPQGAGPTTGGQVMEKMHFWDDGPDDHTVVERDYDSLVGVAGLRRGEPGSAIRKLRAFDHFTAIVGKGREDAGTQPLMESASMRIRTYNMQDEQFAFHRALRSEEVRIQFRGDALDMSEF
Ga0256867_101675212F025476N/AFPRPGLAAWAERKKAGLMGTAKSTHYTPRFRPFDMLGVPNQSLVILENKNHRIGAESVVGIQDCFHRHVDCDMIYFQFCGNTTVETEFGVYEMEPGEVMLIPGGISHRSIGRNDSLRYFAKVTRRWTT
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