NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209160_1014601

Scaffold Ga0209160_1014601


Overview

Basic Information
Taxon OID3300026532 Open in IMG/M
Scaffold IDGa0209160_1014601 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5534
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034863Metagenome / Metatranscriptome173Y
F071041Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209160_10146011F071041GAGVYVPLAITVPVAVGLNVTLQLDVVALRLAKVQGDPVNEPVAVPPLVNATVPRGADVVPTADVSLTNPVHVMD
Ga0209160_101460112F034863N/AVKVTLQLDVVALTLARVHGEPVNDPAAVPPFVNATVPSGALAVPAADVSFTNPVHVVACETTTADGEQLTAVDVVLRLTVTVLPAVGPLPL
Ga0209160_101460113F034863N/AVTLQLEVVALTLARVHGDPVKDPVADPPLVNATVPRGADAVPAAEVSFTNPVQVMTWATTTVAGEQDTAVEVVRNVTVTVLLVAGPLPEWTPSVDV
Ga0209160_10146018F034863N/AVPLAITVPDAVGLNVTLQLEVVALTLARVHGVPTNDPVAVPPLVNATLPRGALAVPAAEVSLTKPVQLMDCATTTVVGEHVTAVDVVLRLTVTVFPAVGPLPLWAVSDDV
Ga0209160_10146019F071041N/AVNVTLQLDVVALTLANVQGVPVNDPVAVPPLVNATEPRGADAVPAAEVSFTNPVHVTT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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