NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209807_1027791

Scaffold Ga0209807_1027791


Overview

Basic Information
Taxon OID3300026530 Open in IMG/M
Scaffold IDGa0209807_1027791 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2732
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017748Metagenome239Y
F019626Metagenome228Y
F042264Metagenome158Y
F048895Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0209807_10277912F017748AGGAMLAALILLAQLHCSPTASGNVDCYDAQKGGAPVLKIEPNLFGGYDLRQTDGTLVRCERKTSGEAECRVVQEGGSK
Ga0209807_10277914F042264GGAMADYPRFTELQAFVPGVESITLHDVPGEEHQTEVVIYDEFGATVSIRLTSYRRIRVIYLRRR
Ga0209807_10277916F048895AGAAGGLPDESGRVFEVVCKGCGRSLMTVERLRDPEIGVLEAHLRACCPSEPLGDAPMLGEVMAPVRVAAVERA
Ga0209807_10277917F019626GGAGGMNRHPSYVLALSNDDLILNRLKERGHRFRRSLGVSVFGCFEFAVLVNRLRTADPSDVARCLRLIESVADALRQTDDGDCVKCLVKLWLFAARIAGEAFPAHSHRYLCLSKSLVPPRPILWSFTDLREEVDGYIKSVGAEGGRLA
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